Experience

Data Steward

Utrecht University Faculty of Geosciences – Since 2021

  • Assisting and educating researchers on implementing Open Science, Open Data, and FAIR Data principles to increase the transparency and integrity of scientific research.
    • Writing and reviewing data management plans for funding requirements, for facilitating coordination of researchers, and keeping track of data in a research project
    • Selecting file formats to maximize re-usability and data functionality
    • Creating resources for researchers to learn about these topics
  • Administering three ArcGIS Enterprise environments for the faculty.

OPS GIS Analyst

Digital Heritage and Humanities Collections, University of South Florida Libraries – 2020-2021

  • Creating web GIS viewers on ArcGIS Online for project sites.
  • Image management and processing with Adobe Lightroom.
  • Writing Python scripts with ArcPy and ArcGIS API for Python for automating data collection, processing, and publishing.

Geospatial Specialist

Digital Heritage and Humanities Collections, University of South Florida Libraries – 2016-2020

  • Site license administration for ArcGIS products including but not limited to ArcGIS Pro, ArcGIS Desktop, ArcGIS Enterprise, and ArcGIS Online, managing licenses, assisting teaching faculty and staff, and installing and configuring software and licenses. 
  • Primarily performing GIS analysis and data management, writing metadata, and publishing paper and web maps with ArcGIS Pro, also using ArcMap, ArcCatalog, ArcGIS Server, and ArcGIS Online.
  • On field projects I collect GPS data using a Trimble Geo7x, fly unmanned aerial vehicles (UAVs) for photogrammetric mapping purposes, and taking photos of architecture, artifacts, and other site related materials using standard photographic techniques as well as with advanced technologies such as gigapixel photography and reflectance transformation imaging (RTI).
  • Develop data management and organization plans, document workflows in written and video form, and assisting the directors with office organization. 
  • Management of our Amazon Web Services ecosystem, provisioning EC2 instances, managing security groups, managing S3 and Glacier data stores, and have worked with a Snowball Edge device. Administering Window Server 2019 instances for IIS web services, as well as installation and management of ArcGIS Server instances. 
  • Designed a data backup solution for the Digital Heritage and Humanities Collections consisting of a main network attached storage system, an onsite mirror and data versioning system, a weekly backup solution to Box.com, and a biannual backup solution to AWS using an AWS Snowball Edge device. 
  • Management of the Digital Media Commons (DMC)
    • I designed the hardware configuration of the 39 computers in the public and closed lab to maximize performance for GIS, photo editing, video editing, 3D modelling and rendering, and CAD work. The computers were purchased as a part of a grant from the University of South Florida, part of a larger expansion of DMC services and opportunities.
    • Writing silent install scripts to quickly and efficiently install software and change registry, administrators, and licensing on computers in the lab. 
    • Present workshops on GIS topics not covered by the USF School of Geosciences to extend GIS education and outreach for the USF Library.
    • Administering the digital skill badging workshop program for Adobe Creative Cloud software by creating and reviewing learning plans for workshops, scheduling instructors to teach workshops, and grading assignments from workshop attendees. 

Graduate/Research Assistant

Alliance for Integrated Spatial Technologies, University of South Florida School of Geosciences – 2013-2016

  • Create tutorials and labs for using Trimble Pathfinder, Trimble Terrasync, and ArcPad for the USF School of Geosciences graduate course in Geographic Positioning Systems, and on ArcGIS Online and Story Maps for the Museum Visualizations course.
  • Photographer for field work and artifact collections, in addition to basic photography I make RTIs, gigapixel panoramas, flying a drone, and photogrammetric 3D models.
  • Responsible for publishing and managing GIS data online with Leaflet, ArcGIS Online, ArcGIS Flex Viewer, Google Earth, and ArcServer, as well as administering ArcGIS Online, ArcServer, and the group website.
  • Worked with another graduate student on creating a smart phone app for a national park to have an interactive tour using Apache Cordova.

Research Assistant

University of South Florida Libraries – 2014

  • Cataloged and geolocated cave and other KARST features around the world from speleological publications.
  • Create and update Dublin Core metadata records for speleological publications.
  • Parsing Spanish, Italian, French, Japanese, and Korean language documents for KARST features. 

Education

Geography M.A., GIS Concentration

University of South Florida School of Geosciences

2016

🇳🇱 My master’s degree was evaluated by Nuffic on November 25, 2020 through the International Diplomawaardering (IDW) in the Netherlands, here is their evaluation:
Hierdoor heeft betrokkene een niveau bereikt dat in Nederlandse termen overeenkomt met dat van de mastergraad in het wetenschappelijk onderwijs in de richting geo-information science.

GIS Certificate

University of South Florida School of Geosciences

2013

 

Geography B.A.

University of South Florida School of Geosciences

2012

Software Experience

Spatial Software

  • ESRI
    • ArcGIS Pro
    • ArcMap/ArcCatalog/ArcScene
    • Survey 123 Connect
    • ArcGIS Collector
    • ArcGIS Server
    • ArcGIS Portal
    • ArcGIS Online
    • ArcGIS Cloud Builder for AWS
  • QGIS
  • Agisoft Metashape
  • Cloud Compare
  • Trimble Business Center
  • Trimble Terrasync
  • Trimble Pathfinder
  • Mapbox Tilemill
  • Potree
  • LAS-zip
  • LAS Tools
  • GPSTest for Android
  • NMEA Tools Pro for Android

Creative Software

  • Adobe Creative Suite
    • Photoshop
    • Illustrator
    • Lightroom
    • Premiere
    • InDesign
  • Blender
  • Affinity Publisher
  • Microsoft Image Composite Editor
  • Da Vinci Resolve
  • GIMP
  • Open Broadcase Suite (OBS)
  • FFMPEG

Computing

  • Operating Systems
    • Windows 10
    • Windows Server 2019
    • Ubuntu Desktop
    • Ubuntu Server
  • Amazon Web Services
    • EC2 (Windows Server and Ubuntu Server)
    • S3
    • Glacier
    • Snowball Edge
    • AWSCLI 1 and 2
  • Filezilla
  • SSH and SCP
  • IIS 7
  • nginx
  • Windows Firewall
  • Windows Subsystems for Linux
  • wget/curl
  • Virtual Box
  • Hyper-V
  • Docker/Podman

Programming

  • Python (Intermediate)
    • ArcPy
    • ArcGIS API for Python
    • xml.dom.minidom
    • NumPy
    • SciPy
    • Google API for Python
    • Boto3
  • SQL (Intermediate)

Office Software

  • Microsoft Word 365 and 2019
  • Microsoft Excel 365 and 2019
  • Microsoft PowerPoint 365 and 2019
  • Microsoft Teams
  • Microsoft Planner
  • Microsoft Office 365 Forms
  • Microsoft OneDrive, Sharepoint, TeamsSite
  • Docusign
  • Adobe Acrobat DC
  • Slack
  • Zoom
  • Skype/Skype for Business
  • LibreOffice Write
  • LibreOffice Calc
  • Google Forms
  • When to Work

Languages

C2

English

Mother Tongue

A2

Nederlands (Dutch)

Evaluated June 2022 by Albeda College

Certifications and Licenses

AWS Certified Cloud Practitioner

January 6, 2021

The AWS Cloud Practitioner certification badge.

ESRI Desktop Associate EADA 19-001 Certification

December 22, 2020

The ArcGIS Desktop Associate Certification badge.

Certified Geographic Information Systems Professional (GISP)

February 2020, expires February 2023

Certification Number 160772

FARO Laser Scanning Certification with FARO X330 Scanners and FARO Scene Software

January 2017

Papers and Conferences

Technical Contributions to Papers (Unnamed in Citation)

Preservation, Conservation, and Curation Plan: Moseley Homestead (8HI208), Brandon, Florida

Collins, Lori; Doering, Travis; Gonzalez Garcia, Jorge.

Technical Report, 2020

The Use and Potential Misuse of 3D and Spatial Heritage Data in Our Nation’s Parks

Collins, Lori; Doering, Travis; Gonzalez Garcia, Jorge. Technical Report, 2019

Remote Sensing: Lidar, GPS, and GIS Examination of Cattle Mound Archaeological Sites in Congaree National Park

Collins, Lori; Doering, Travis; Gonzalez Garcia, Jorge. Technical Report, 2018

Terrestrial and Airborne LiDAR Digital Documentation of Kosciuszko Mine, Ninety Six National Historic Site

Collins, Lori; Doering, Travis; Gonzalez Garcia, Jorge. Technical Report, 2015

The Chinsegut Hill 3D Documentation Project

Collins, Lori; Doering, Travis; Gonzalez Garcia, Jorge. Technical Report, 2014

Conferences (As Presenter)

A Day When Satellites Aligned: Examining Landsat and Sentinel Imagery in Tampa Bay, Florida

Garrett Speed

Accepted Abstract, event cancelled due to COVID-19

Florida Academy of Sciences Annual Meeting 2020

PowerPoint Presentation

Abstract

Landsat and Sentinel are earth observation programs run by the United States and European Union respectively, and both serve similar goals of creating multispectral imagery of the planet for monitoring and mapping purposes. The Landsat program, in operation since the 1970s, is currently on its seventh successful mission with the Landsat 8 satellite, and has demonstrated its value for earth observation many times over. Sentinel 2 is a newer platform in operation since 2015, and with its more frequent image collection and higher resolution it has quickly proved its value. Each Landsat and Sentinel satellite revisits the same spot on earth every 16 days and 10 days respectively, each platform has two satellites in an orbit that is offset in such a way that the revisit time is cut in half, resulting in eight and five day revisits respectively. These orbital differences allow the satellites to observe the same area of the planet the same day several times a year. This research analyses a pair of datasets from the two satellite platforms collected three minutes apart on June 23, 2019, and compares the results of each platform on common classification and analysis tools employed by researchers who use the two platforms. In addition to comparing results of each independent platform in classification and indexing analysis methods, the power of data fusion of these short time difference datasets in classification schemas will be demonstrated.

UAV Data Collection and Data Analyses with the July 2017 Land O’ Lakes Sinkhole

Garrett Speed, Lori Collins, Travis Doering

Florida Academy of Sciences Annual Meeting 2019

PowerPoint Presentation

Abstract

In July 2017 a sinkhole swallowed two houses and condemned many more in Land ‘O’ Lakes, FL. Imagery of the site was able to be collected quickly and on multiple dates using an unmanned aerial vehicle (UAV) with a camera. Using the UAV, photos from multiple altitudes with nadir and oblique angles were combined using photogrammetric software to create a 3D point clouds, orthophotos, and digital terrain models. Using the photogrammetricly generated orthophotos from multiples dates, a time series of imagery was created to show the expansion and later the remediation of the sinkhole carried out by Pasco County Emergency Management. To quantify the surface area of the sinkhole and its expansion, the orthophoto created for each day had the extent of sinkhole traced in GIS, allowing for the calculation of distances across the sinkhole, area, and circumferences, as well as to quantify and delineate where the expansion and contractions occured from day to day. The orthophotos were also combined together in a web map so researchers can compare the imagery collected over multiple days. The data is also presented in a web GIS tool that combines aerial LiDAR data, georeferenced historic imagery dating back to 1938, and georeferenced historic maps.

Classification of LiDAR and Satellite Imagery Using Neural Networks

Garrett Speed

Florida Academy of Sciences Annual Meeting 2015

PowerPoint Presentation

Abstract

Feature detection is a popular subject of remote sensing, and satellite imagery has been classified extensively with neural networks. Neural networks are computer algorithms that aim to mimic processes in the human brain, and are used for classification in many fields. Classification of LiDAR data in literature has been limited to low density autonomous vehicle LiDAR units, and very few studies have looked at classification with neural networks. In my research I am applying the popular backpropagation neural network because of its widespread use and documented success, and the ARTMAP neural network because it is able to avoid ‘catastrophic forgetting’ that is sometimes a problem with backpropagation. There are two parts to my study, first I will look at aerial LiDAR, where the neural networks will be classifying aerial LiDAR data derivatives combined with satellite imagery, and the second where I will look at terrestrial laser scanning (TLS) LiDAR returns, RGB color values, and geometric calculations. The neural networks will be evaluated for their ability to detect shell midden land from classification signatures in data collected from Charlotte Harbor Preserve State Park at the mouth of the Myakka River and Cockroach Bay Preserve State Park in Tampa Bay. The neural networks are implemented through the Neural Network code in MATLAB, and the data is preprocessed for MATLAB use using a Python script. As LiDAR is a dimensional increase from 2D satellite imagery, the neural networks are expected to perform just as well as they do with classifying satellite imagery . Results yielding the ability to accurately detect shell midden signature from remotely sensed LiDAR data will improve archaeological survey and management capabilities.

A Warning System for Considering Social Characteristics of a Population at Risk

Jennifer Collins, Charles Paxton, Garrett Speed

University of South Florida Undergraduate Research Symposium 2011

Poster

Abstract

In July 2017 a sinkhole swallowed two houses and condemned many more in Land ‘O’ Lakes, FL. Imagery of the site was able to be collected quickly and on multiple dates using an unmanned aerial vehicle (UAV) with a camera. Using the UAV, photos from multiple altitudes with nadir and oblique angles were combined using photogrammetric software to create a 3D point clouds, orthophotos, and digital terrain models. Using the photogrammetricly generated orthophotos from multiples dates, a time series of imagery was created to show the expansion and later the remediation of the sinkhole carried out by Pasco County Emergency Management. To quantify the surface area of the sinkhole and its expansion, the orthophoto created for each day had the extent of sinkhole traced in GIS, allowing for the calculation of distances across the sinkhole, area, and circumferences, as well as to quantify and delineate where the expansion and contractions occured from day to day. The orthophotos were also combined together in a web map so researchers can compare the imagery collected over multiple days. The data is also presented in a web GIS tool that combines aerial LiDAR data, georeferenced historic imagery dating back to 1938, and georeferenced historic maps.

Conferences (As Contributor)

Spatial and temporal imaging of a cover-collapse sinkhole in west-central Florida through high resolution remote sensing and geophysical techniques

Christine Downs, et al

Accepted Abstract, event cancelled due to COVID-19

Sinkhole Conference 2020

Paper Presentation

Read the paper here

Abstract

On July 14, 2017, a cover-collapse sinkhole formed in the front yard of a home in Pasco County, FL. Starting as a depression, the initial collapse occurred rapidly (120 minutes) with subsequent slumping over the course of three days. The sinkhole is oval and cone-shaped with a northeast-southwest long axis and ridges on the northwest and west slopes. A combination of remote sensing, geophysics, and soil borings are used to characterize the temporospatial surface changes and subsurface structures at this sinkhole. Repeat surveys started four days post-collapse and concluded 10 months post-collapse. Surface changes over time are computed using terrestrial laser scanning (TLS) and drone-based structure-from-motion (SfM) photogrammetry, with the Multiscale Model to Model Cloud Comparison algorithm. The initial collapse area measured 1,395 square meters (day 4) and grew to a maximum of 1,626 square meters (day 32) before stabilization efforts partially the sinkhole and built up the perimeter walls. Post-collapse and pre-stabilization activity in the form of perimeter growth occurred on the northeast and southwest edges. Ground-penetrating radar detected a semicontinuous horizon within sands and silts that appears to correspond to the historic ground surface present before portions of the nearby Saxon Lake were filled in as part of agricultural and housing development modifications to the area in the 1960s and 70s. The direction of the collapse’s long axis, post-collapse activity, and the orientation and depth of a semicontinuous subsurface horizon all suggest a northeast-southwest trending linear or elongated karst feature contributed to the collapse and subsidence.

Terrestrial and UAV LiDAR

Lori Collins and Garrett Speed

Florida ASPRS Fall 2018 LiDAR Conference

PowerPoint Presentation

Event Link. 

Seismic Observations Following the July 2017 Pasco County, West Florida, Sinkhole Collapse

Jochen Braunmiller, et al

Seismological Society of America Annual Meeting 2018

Poster

Abstract

A sinkhole collapse on 14 July 2017 destroyed two homes and required evacuation of 9 additional residences in Land O’Lakes, Florida. The sinkhole formed rapidly and within 10 hours reached most of its final size of approximately 40 by 50 m and a maximum depth of about 15 m. According to Pasco County officials, this is the largest sinkhole to have formed in the county during the last 30 years. The site is located near two natural lakes and occurs within an area of well-developed karst. The county allowed USF geoscientists to study the sinkhole resulting in an extensive collection of LiDAR, GPR, and lake-bottom profiling data. The seismology group installed one broadband 3-component seismometer on 25 July ~20 m W of the sinkhole edge and a second one on 27 September about 10 m E of the sinkhole edge. Data are recorded continuously at 200 Hz. Drilling to understand soil structure integrity and remediation work to stabilize the sinkhole led to extreme noise levels during daytime operations through most of August 2017. Nighttime noise is lower, but due to nearby houses, sensors pick up strong 60 Hz noise caused by AC units. The only signal unequivocally attributable to the sinkhole occurred on 5 August just after stabilization work, consisting of partial backfilling with limestone rocks, began that caused the sinkhole to widen by about 3 m along its entire western edge. After completion of stabilization work, no further signals have been detected from the sinkhole. Besides sinkhole monitoring, we recorded several large global earthquakes, e.g., the Mw=8.2 and Mw=7.1 Mexico earthquakes on September 8 and 17, respectively, as well as Hurricane Irma as it passed within 20 miles as a quickly weakening category 1 hurricane. In addition to outreach and sinkhole documentation as part of a multi-sensor approach, we use the site to train seismology graduate students in field practices and conducted a class field trip.

The Future of Rock Art and Monument Documentation with Implications for Technology Integration, Dissemination and Learning, and Resource Preservation

Lori Collins, et al

XVIIIth Congress UISPP

PowerPoint Presentation

Link to Document.

Abstract

The ability to quickly and accurately document the world around us is revolutionizing fields of archeology and museum sciences and is creating new areas of research synergy and curriculum development related to rock art. Much of the world’s rock art and monumental carvings are at risk or imperiled, facing issues such as climate change, acidification of the rain, air pollution, and vandalism and looting. Approaches using an integration of tools ranging from global positioning systems and spatial mapping strategies, 3D documentation with terrestrial and close range laser scanning, and photogrammetry and other specialized imaging, are greatly advancing capabilities for rapid digitization, preservation, research, education, and dissemination. These technologies are helping to improve not only data access and the ability to share, but are enhancing interpretation and management, and assisting in conservation measures that will ensure continued visibility of these fragile resources. Using case studies from heritage and rock art documentation and digital collections projects in Mexico, Europe, and the United States, we will demonstrate and examine technological capacities, and consider limitations and issues such as scale, resolution, appropriateness of methods, and ethical implications for the future of rock art recording, digital sharing and learning. We will emphasize and demonstrate the role of libraries in these developing heritage preservation programs.

A Multi-Sensor Approach to Documenting a Large Collapse Sinkhole in West-Central Florida

Lori Collins, et al

American Geophysical Union Fall Conference 2017

Poster

Abstract Link.

Abstract

The Saxon Lake sinkhole collapse of July 14, 2017 in Land O Lakes, Florida, caused the destruction of two homes and the evacuation of nine additional residences. The sinkhole is slightly oval with dimensions of approximately 51 meters east-west and 42 meters north-south, and it is reportedly 15 meters deep. This is presumably the largest sinkhole to form in Pasco County during the last 30 years. The surface collapse happened rapidly and continued over three days, with slumping and erosion increasing the size. The site is located near two natural lakes in a housing development from the late 1960s. This occurrence is within an area of well-developed karst, with a number of natural lakes. We present preliminary analysis of the sequence of deformation, sinkhole geometry, surrounding subsurface structures, and seismic activity. Data are assembled from terrestrial and aerial LiDAR, UAS survey and PhoDAR modeling, aerial imagery, ground penetrating radar, lake-bottom profiling, and seismic monitoring. Additionally, multi-sensor data were brought together in a Geographic Information Systems (GIS) and included an analysis of georeferenced historic imagery and maps. These spatial data indicate historic land use change and development alterations that included lake shore reconfiguration, canal construction, and connection of lake water systems in the area of impact. Three subsidence reports from the 1980s are also recorded within 500 meters of the collapse